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Therefore, to verify the model, a molecular dynamics model of straight NWs was also developed using the same parameters (with different geometry parameters) and the simulation results were compared with the reported ones.
As solvent probe radius we first assumed 1.4 Å, a value that is frequently used to model a molecular "water-sphere".
Finally, we included in the model a molecular species representing AP-1 transcription factor complex formation, by adding two additional interactions involving the c-Jun and c-Fos dimerization.
Using the structure of the Lm SAS-697 274 SAS-697 274mer as a search model, a molecular replacement solution could B Cfound that allowed the subsequent plasement of the coiled-coil part presearchn the construct.
Eventually, separate analyses were performed on the coding region and on the entire mitogenome by assuming a GTR/REV mutation model, a molecular clock and gamma-distributed rates, approximated by a discrete distribution with 32 categories.
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The null model assumed a molecular clock, while in the alternative model each branch was allowed its own unique rate of molecular evolution.
The behavior of a model with only one intermediate state and a model describing a molecular zipper is studied.
The model with a molecular clock enforced (-ln 15494.5) was compared with a model without a molecular clock (-ln 15433.9) using a likelihood ratio test.
First, a putative 3-D model structure of human olfactory receptor protein (P30953) was modeled using a molecular simulation method.
Diffraction data were phased by using our structure of PBP2 from H. pylori as a model in a molecular replacement experiment.
The ability to use a single kinetic scheme to fit dwell-time distributions arising from a variety of experimental conditions is important for identifying a mechanochemical model of a molecular motor.
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