Sentence examples for mode of alignment from inspiring English sources

The second mode of alignment was generated by docking the inhibitors in the binding pocket using the DOCK and AFFINITY suite of programs; this gave a second model.

In addition, this mode of alignment was combined with options (−k 1 – best) that instructed Bowtie to report only the best alignment if more than one valid alignment exists.

In addition, this mode of alignment was combined with options that define which and how many alignments should be reported; the option "-k 1 --best" instoucted bowtie to report only the best alignment if more than one valid alignment exists, while the option "-m 1" instructed bowtie to refrain from reporting any alignments for reads having multiple reportable alignments.

The second alternative was to gradually fill the notches between the protrusions, in which case we studied the effects of the protrusion height, degree of filling, and two modes of alignment.

The "-k 1 --best" and "-m 1" modes of alignment reporting were also used in combination with the end-to-end k-difference (−v) alignment mode.

At a practical level, the BFAST performance tests presented here demonstrate various modes of accuracy of alignment for both simulated data and real-world datasets from both the Illumina and ABI SOLiD sequencing platforms.

Three models of BS-Seeker2 were used: BS-Seeker2-local (local alignment mode of Bowtie2), BS-Seeker2-e2e (end-to-end alignment mode of Bowite2) and BS-Seeker2-Bowtie (utilizing Bowtie).

In some instances, sub-alignments were constructed, and then either sequences, or other sub-alignments were added using the Profile alignment mode of T-Coffee or ClustalX [ 62] (default program settings).

The 'local alignment' mode of Bowtie2 allows reads to be partially mapped by trimming 5' or 3' ends during mapping, and BS-Seeker2 in 'local alignment' mode will report the hit with the unique best scores, which should exceed the minimum score (defined by the parameter "--score-min" of Bowtie2).

Atomic force microscopy (AFM) imaging confirms the vertical alignment mode of SWCNT attachment through significant changes in surface roughness compared to bare gold surfaces and the lack of any horizontally aligned SWCNTs present.

The local alignment mode of BS-Seeker2 has the highest mappability.