Sentence examples for mobile elements using from inspiring English sources

Therefore, our data substantiates and adds to previous observations that eutherian Xist consensus has extended homology to Lnx3 in the promoter region, exons 1, 5 7, and intron 4. We compared consensus exon sequences with the database of chordate mobile elements using the program WUBLAST 2.0 and elevated search sensitivity by setting the word size W = 3 instead of the default value W = 10.

Herein we presented a reliable and efficient method for linear mapping of mobile elements using whole-genome DNA microarrays.

In this study, we present an efficient and reliable method for linear mapping of mobile elements using whole-genome DNA microarrays.

We compared the sequence of mouse Pldi- Ak158810 loci and homologous sequences in other 5 species (rat, human, dog, opossum and chicken) with the database of mobile elements, using RepeatMasker program [ 19].To understand whether Pldi- Ak158810 loci is interrupted by ancient TEs, we manually checked and listed the eleven TEs, which exist in at least two species including mouse (Table 1).

Tiresias identifies mobile element insertions using clusters of improperly mapped read pairs comprising one read that maps uniquely to the genome and one that maps to a set of element-specific consensus sequences.

Finally, several methods detect sites of mobile element insertions using collections of known transposable element sequences, by searching for read pairs where one mate is mapped to a known element and the other to a unique part of the reference genome (Ewing and Kazazian, 2011; Hormozdiari et al., 2010; Stewart et al., 2011).

Reference copies for each mobile element were used to search with BLASTX against the nonredundant NCBI database (1e− e-value cutoff).

The 25 best hits for each mobile element were used as the input for MEGAN4 (Huson et al. 2011), and taxonomical assignments were done with the default LCA parameters.

Mobile elements were investigated using BLAST analysis of the sequences from the ICEberg database [ 103] against a database of the isolate collection with no filters or e-values defined and phage were investigated using the PHAST database [ 104].

Because erm and mef are cocarried with tet genes on mobile elements, tetracycline use also affects macrolide resistance (4 ).

This variation can be used for genotyping variability within wAnaINF as has been reported in studies of wMel, where the absence or presence of these mobile elements has been used as genotyping tools to differentiate within wMel strains (Riegler et al. 2005; Woolfit et al. 2013).