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Trypanosomatid genomes are highly colonised by repeats of mobile elements belonging to the L1 Tc/ ingi clade (also known as the ingi clade); these elements are the best represented retrotransposons in these organisms [ 7, 8].
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DNA transposons are surprisingly abundant and elements belonging to the mariner family are by far the most preponderant components of the mobile part of this genome with 11,015 m ariner transposons that could be clustered in 89 groups (75%% of the mobilome).
Elements belonging to the Mutator superfamily are generally called Mutator-like elements (MULEs).
The only exception are elements belonging to the Tas superfamily.
Mr. Argue made all these elements belong together naturally.
These elements belong to the MuDR, Jittery and Hop families.
Those elements belong to IS982 and IS5 families, respectively.
These Ty elements belong to five families, Ty1 to Ty5.
Genes from these mobile elements were considered to belong to mobilized or mobilizable gene families.
Interestingly, genes belonging in mobile elements were more highly expressed in the USA400 strain compared to the USA300 isolate.
The results were less dramatic but similar when expressed in number of families shared between E. coli and mobile elements: 61% had unknown functions, and 16% belonged to the replication and repair category.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com