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Of the 34 possible nodes common to both datasets (mitochondrial partition), only eight clades are congruent.
As expected, the mitochondrial partition contained a greater proportion of variable sites (38%) relative to the nuclear matrix (15%).
Setting this rate for the mitochondrial partition allowed us to estimate the rate of substitution of the two nuclear partitions.
The mitochondrial partition contained 368 parsimony informative characters (31%) while the nuclear partition contained 208 parsimony informative characters (8%).
In ten of these 13 cases, a mitochondrial partition (in 9 cases, cytochrome c oxidase subunit I) conflicted with the other partitions.
The major conflicts concern the morphology-based taxonomies as ten genera recognized by Kailola [ 15] and nine by Marceniuk and Menezes [ 21] were not monophyletic in any of the reconstructions conducted on the mitochondrial partition (broadest taxon sampling).
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The two sets of root-to-tip distances were then compared graphically to evaluate the lineage-specific rate correlation between the two mitochondrial partitions.
Overall, the mitochondrial partitions had a greater number of phylogenetically informative characters and produced fewer most parsimonious trees than nuclear DNA data.
Results from the pair-wise ILD test between the two mitochondrial partitions fail to reject the null hypothesis that both loci are congruent.
The comparison of branch lengths obtained on the protein- and rRNA-coding mitochondrial partitions, first demonstrates that tunicates are clearly the fastest evolving species of the metazoan dataset on both partitions.
Our analysis shows that Myo19 is indeed localized to mitochondria and that its silencing leads to defects in the distribution of mitochondria within cells and in mitochondrial partitioning at division.
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CEO of Professional Science Editing for Scientists @ prosciediting.com