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Exact(8)
In these cases we used the built-in correction of the BiSSE and BAMM models20,85 to account for missing species in our phylogeny.
Sampling frequencies were correspondingly calculated to incorporate missing species in our phylogenies.
We fitted all four models under two alternative assumptions about the proportion of missing species in the phylogeny.
Missing species in the genomicBLAST tables comprise for example the fish Gasterosteus aculeatus, the plants Ricinus communis and Populus trichocarpa, and the fungus Batrachochytrium dendrobatidis.
Except in C. globosum where it was also missing, species in the Pezizomycotina had up to three proteins belonging to cluster 15.
Reasons for missing data comprise more than 4 missing species in source MSAs and lack of convergence in the PSS calculation.
Similar(52)
The supertree presents several challenges to the estimation of ED when compared with the (unknown) true phylogeny: poor resolution, missing species and uncertainty in node ages.
To evaluate the effect of incomplete species sampling, we used taxonomic information about missing species to include them in our phylogeny.
By analyzing the reactions in which the missing species participated and comparing the SBML models to their description in the corresponding publications, we found the potential inconsistencies.
In BIOMD094, missing species remained.
If these conversed genes were separated by more than 1 MB or were located on different chromosomes, the group of genes was considered to have no syntenic coverage in the missing species.
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