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Note that the conversion time for event 4 is difficult to determine precisely because we do not have sufficient information from many of the species (mainly due to missing sequences), whereas event 3 has eight outgroup results supporting the inference that it followed the separation of human and gibbon.
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MP-EST allows missing sequences for some genes.
Subsequently, we added the "missing" sequences to our dataset.
Only a partial sequence was identified for CD8α due to missing sequences in the genome.
There are still some missing sequences, which will probably never be rediscovered.
Deletions or missing sequences are marked with "*".
Question marks were used to represent missing sequences.
There were 169 discordances between the optical map and the pseudomolecules, including missing SwaI sites, extra SwaI sites, missing sequence, extra sequence, complex events, and potential misassembly.
The trans-membrane domain is present in all Group B and K bZIPs from green plant lineages, whereas the S1P interaction domain was not found in some of them, perhaps due to missing sequence data.
Further analysis revealed that the missing sequence stretch lies within the intron sequence.
An "N/A" not available indicates missing sequence data.
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