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Both calibration approaches (A and B) are detailed, and results of analyses A and B repeated using the reduced data set that did not contain missing sequence data ('no missing' data).
The trans-membrane domain is present in all Group B and K bZIPs from green plant lineages, whereas the S1P interaction domain was not found in some of them, perhaps due to missing sequence data.
Only a subset of species were included in each analysis, because missing sequence data (exon deletions and/or absence from available data) meant that the number of codons available for analysis from all species was very low unless some species were removed from the analysis.
An "N/A" not available indicates missing sequence data.
The discrepancy of about 5% could be explained by missing sequence data from centromeric regions.
This could be due to missing sequence data and/or assembly problems.
Similar(35)
Haplotyping can aid the detection and correction of erroneous or missing sequencing data - for example, by detecting inconsistencies between the genotypes within a family [ 8, 64 ].
Next, we discarded the SNPs that were only found in 1 of the isolates because of technically missing sequence coverage in the other isolate data.
Because missing data can have deleterious effects on analyses that depend on branch length [ 102], we tested the effect on age estimates of missing sequences in our data set.
Although a lack of data could be responsible for this situation, our matrix includes 3,249 variable sites distributed among 11 nuclear genes, and no taxon in our matrix was missing any sequence data.
As a proof of this concept, we identified giant viruses that were missed in sequence data sets, including among sequences published in Nature in 2010 (Chapman et al. 2010).
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