Suggestions(1)
Exact(3)
Similarly, Btau4.6 presented a doubled rate of called INS (missing sequence) and Inverted/Translocated discordances (Table 3).
This high repeat content also may have contributed to assembly problems in some clones, as almost all contained missing sequence and multiple scaffolds.
Pika MVP was included in the ASR because this region of exon 9 was the only missing sequence and is more likely to be due to sequencing problems rather than the absence of this conserved region.
Similar(57)
In particular we argue that rather than assuming similarities between patterns of landscape evolution between the on- and off-systems we should anticipate dissimilarity of patterns, missing sequences and different landscape formation processes particularly in those areas of the shallow shelf area formerly occupied by drainage basins during sea level low-stands.
The application of the suggested methods show that they are comparable to the state-of-the-art when imputing short missing sequences and do hold the upper hand when larger chunks of subsequent data are missing.
The scientists started with the genome of a domestic cat a female Abyssinian that had been published in draft form in 2007, then filled in missing sequences and identified genes.
Even though C57BL/6J is the reference strain, we nevertheless found hundreds of missing sequences and tens of thousands of intergenic transcripts in this strain.
The results of the Blast searches were double-checked against the Ensembl gene families (if available) to collect missing sequences and to get an initial overview of the gene family tree topology.
However, due to missing sequences and alignment gaps, the effective branch length available at each site is typically much smaller: 75% of the sites have total branch length less than 2.2, roughly equivalent to having M=4.7 genomes in the our simulation study above.
Combined with the absence of close reference genomes for these organisms, it is difficult to estimate the amount of missing information for each organism, meaning that all subsequent analyses are unable to distinguish between missing sequence data and true gene absences within these organisms.
GPI1-rs1 is also missing sequence encoding exons 5 and 6 but contains an N-terminal extension and is, therefore, 485 amino acids (Additional file 5).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com