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As the rate of missing loci increases the sequences become less informative.
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The fractional change in unassigned individuals with each increase in missing loci was used to determine the minimal number of loci necessary for accurate assignment.
Using bootstrapped datasets (n = 10,000), a threshold of 6 was established for a maximum acceptable number of missing loci.
Simulated genotypes have no missing loci; therefore, before estimating Ne, we introduced missing loci to emulate the empirical data structure that had missing loci.
Furthermore, four studies included isolates with missing loci in the cluster analysis, whereas four excluded isolates with missing loci and the remaining 20 did not report how they dealt with missing loci.
When considering only trailing end gaps and missing loci as missing data, the entire concatenated matrix was 90.3%% complete.
In that case, the two neighbouring loci P and R of the missing locus Q can represent the adjacent two loci on the same side of the Q.
Missing loci were imputed using expectation maximisation.
All nine strains analyzed from 1977 to 1996 missed two loci (Loci 1 and 2).
Missing more pills increases that risk.[5].
While B. parapertussis hu 12822 is missing the locus encoding a putative type II secretion system, B. parapertussis ov strain Bpp5 is missing the locus encoding flagella.
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