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Exact(10)
In general a missing gene in one isolate was found in another.
To count OrthoMCL families shared by all M. oryzae isolates, we did not consider BR29 and authorized one missing gene in rice isolates.
In all cases, growth of the mutant strain expressing the missing gene in trans was indistinguishable from that of the wild-type, thus ruling out polar effects.
In this case, the values associated with the missing gene in a genome will not be available, and can be implemented as NaN (not a number) in many modern computing languages such as Java.
An explanation for the "missing" gene in the downy mildew is that one gene duplicated early in the Phytophthora lineage, since two similar RIO genes reside near each other in P. infestans, P. ramorum, and P. sojae.
The reaction perspective (and also the EC number perspective) can be used to find possible candidates for a missing gene in a particular database or reveal that the gene is missing in all pathway databases.
Similar(50)
The missing genes in A. kona mtDNA include four from the S10 operon (rps10, rps19, rpl2, and rpl16), all of which are identified in A. kona nuclear contigs.
Nonetheless, the group reported, the gene that was the closest equivalent to the missing genes in the two nematode strains was also deleted in these C. briggsae.
Missing genes in the Calvin cycle are also common features in the other four Roseobacter clade bacteria with complete sequences [2], [5], [9], suggesting that carbon fixation mechanisms other than the Calvin cycle are needed for the AAPs.
The 12 missing genes in those short targeted regions were therefore not retained in further analysis.
Interestingly, some of the missing genes in these pathways are present in the Hamiltonella genome.
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