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Missing characters represented 12.5% of the amino acid data set.
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Missing characters represent 7.4% of the data set.
Various strategies have been developed to deal with the issue, including creating new characters, allocating Chinese characters used in written Mandarin with similar meanings (but dissimilar etymology) to represent the missing characters, or using romanization for the "missing 15%".
Gaps were treated as missing characters.
Gaps and missing characters were treated as missing data.
The MRP-matrix resembles a multiple sequence alignment with binary characters {0,1} and missing characters.
Missing nucleotides, e.g. tRNA-Thr and Pro genes for some species, were coded as missing characters.
Gaps corresponding to missing data of few peptides were treated as missing characters, all other gaps as 21st amino acid.
MP analysis was with PAUP* 4.0b10 [ 49]; indels were treated as missing characters.
All nucleotide sites were equally weighted and gaps were treated as missing characters.
These problems mainly arise from the difficulty to evaluate missing characters as reduced or never developed.
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CEO of Professional Science Editing for Scientists @ prosciediting.com