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The mismatch rate was 0.5%.
The mismatch rate was 0.5% suggesting that lacking HWE for +1444 may be due to random residual genotyping error, but biological selection bias or other populational inhomogeneity cannot fully be excluded.
Also, across all SNPs the average parent-offspring mismatch rate was 0.17%.
The total genotype mismatch rate was 0.73% for duplicated SNPs and 0.76% for duplicated samples.
In other words, the mismatch rate was again approximately 10%, suggesting that O. melastigma might be divergent from O. latipes.
The proportion of loci where two different genotypes were recorded for the same locus in the same individual (genotyping mismatch rate) was also calculated across all four replicates.
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Matching accuracy and mismatch rate are manually determined for each match, namely describing matching performance with accuracy and error.
Additionally, the genotypic mismatch rate is highly correlated with the array call rate, and this relationship is seen for both Nsp and Sty arrays.
Per-position mismatch rate is the fraction of overlapping read pairs that are mismatched at any given location in the genome.
Per base pair mismatch rate is the total number of mismatched read pairs summed across all bases in the genome divided by the total number of read pairs.
PBMC and LCL mismatch rates are also not significantly greater than rates seen in control pairs.
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