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Improved collaborations should be fostered by the establishment and harmonization of standard operating procedures for sample processing, data acquisition and formatting; and by the development of software that is user-friendly for the non-specialist as well as facilitating an Open Access policy to allow free data sharing and automatic mining of publications.
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'RetinoGenetics' integrated a broad range of data types associated with IRD through in-depth mining of 934 publications and extensive 'in silico' functional analyses.
In future analyses, Natural Language Processing will help to improve these queries by mining the full text of publications for a wide variety of concepts, and provide additional evidence of association among terms.
Further mining of these miRNA-citing publications for relationships between 63-set miRNAs and human genes revealed 39 of the 63-set (60%) interacting with 153 human genes (Table S5).
Our future plans include automated literature mining methods that will provide targeted extraction of publications that can be used to annotate major cancer genes.
The present issue emphasizes the application of text mining on biomedical/clinical publications and knowledge bases to facilitate the discovery and management of translational medical research knowledge.
Publications sources of GeneCards include both manually curated publications (e.g. UniProtKB/Swiss-Prot) as well as text mining approaches that report connections between a gene and a list of publications.
Text-mining also ensures the investigation of latest and wider range of publications.
To verify the robustness of our multivariate results, we perform two groups of additional tests: (1) investigation of data mining bias, (2) analysis of publication bias and exploration of heterogeneity.
His résumé highlights a host of publications on subjects including information modeling, neural networks and data mining.
Given the high intrinsic performance of the text mining tool, we can argue that most of the variants are not present in the narrative content of publications.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com