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In this paper, we also illustrate how WildSpan can be invoked as the protein-based or family-based mining mode for future proteomics applications.
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The family-based mining mode of WildSpan is developed for extracting sequence signatures for a group of related proteins (e.g. a protein family) for protein function classification.
The protein-based mining mode of WildSpan is developed for discovering functional regions of a single protein by referring to a set of related sequences (e.g. its homologues).
The protein-based mining mode of WildSpan aims at discovering functional regions for a query protein based on a set of homologues found in sequence databases.
In this experiment, we show the potential of the W-patterns found by invoking the family-based mining mode of WildSpan to serve as the diagnostic patterns for protein families.
First, we conduct experiments on a protein-protein docking benchmark [ 27] for evaluating the performance of the protein-based mining mode of WildSpan in identifying functionally important regions of proteins.
On the basis of this survey, according to hydro geological conditions and heat-harm of various mines, three typical mining modes of heat-harm are summarized: Jiahe mode, Sanhejian mode and Zhangshuanglou mode.
Next, we execute WildSpan in family-based mining mode, and investigate the potential of the W-patterns to serve as diagnostic patterns for a protein family.
The instrument was run in the Cu/Zn mining mode.
As stated in "Methods" section, the XRF instrument was operated in the mining mode.
There's no mode for locusts.
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