Sentence examples for mining candidate from inspiring English sources
The results indicated that 70% of candidate genes showed significantly expression changes under two water treatments and our strategies for mining candidate genes are feasible and relatively efficient.
Thus, by combining both text mining candidate selection approach and sequence-based classifier, a novel hybrid strategy is proposed for gene priority with a specific function protein.
Assignment to GO terms related to defense and Blast2go annotation (Additional file 3) provide a further level for mining candidate genes involved in host defense responses, complementing Blast nr-derived annotation.
Compared with the reported QTL for drought tolerance, this chromosomal region (bin 1.07) harbored important QTL involving in flowering time and grain yield under water-stress condition, suggesting that cluster analysis was credible and successful in mining candidate genes for the target traits in our study.
In this work, we focused on mining candidates from known genes (i.e., 134 CNV genes) according to the aforementioned strategy of adopting prior knowledge.
There exist, for example, several known methods [ 10, 29] that use sequence tags to mine candidate peptides in a database.
The list of putative deleterious LoF variants can be used to mine candidate regions from association studies for potential deleterious candidate variants.
It is important to mine candidate genes and unravel molecular mechanisms in response to drought stress in maize, which would help accelerate genetic improvement through marker-assisted selection.
Our objectives were to (1) identify QTL associated with RPR of maize stalks; (2) dissect the main-effect QTL with detailed haplotype in the target region; and (3) mine candidate genes associated with maize stalk strength.
After identification of BAC contigs/clones in the region or proximity QTLs for drought tolerance (" QTL-hotspot"), Ascochyta blight and Fusarium wilt resistance, an effort was made to mine candidate genes in the genomic regions after aligning molecular markers present in/associated with the QTL regions on genome map/sequence assembly.
The resulting MINE candidates were consistent with 93% of the NIST MSPepsearch results.
