Sentence examples for minimum sequence threshold from inspiring English sources

Combined graphs were generated for each analysis with a level 3 cut-off and a minimum sequence threshold of 100 per category.

One implementation of the algorithm clusters the sequences into the first cluster for which the minimum sequence identity threshold is satisfied.

Minimum sequence similarity threshold was specified in terms of percent identity (-S parameter) and varied between 10 and 80 with step size 10.

The transcriptomes of A. deserti and A. tequilana were compared using reciprocal BLAT analyses [ 33] using a minimum sequence identity threshold of 90%.

This latter procedure would benefit from an empirical method for determining, from the data, a minimum sequence difference threshold for clustering that eliminates false homozygosity.

In order to ensure sufficient allele sampling, as well as to prevent sequencing errors from appearing to be actual variants, all four studies use or recommend a minimum sequence depth threshold, ranging from 8- to 30-fold depth of coverage.

We applied standalone BLAT (BLAT-score threshold: 100, minimum sequence identity: 75 %; [ 96] to annotate all 36 transcriptome assemblies independently using 10,602 unique Apis mellifera Refseq proteins not involved in olfaction as reference (accessed 10/22/12; [ 97]).

The sequenced draft genome of H. parasuis serovar 5 strain 29755 (NZ_ABKM00000000) was aligned to the complete genome of H. parasuis strain SH0165 (CP001321) using BLASTN (minimum sequence identity of 95% and expected threshold of 1e−5).

First, reads were filtered using the CutAdapt running sum filter, using a PHRED quality threshold of 30 (−q) and minimum sequence length (−−minimum-length) of 20 bp [ 27].

The de novo assembly from MIRA results in 33222 contigs, which were passed to CAP3 to get a more robust assembly, with a minimum sequence overlap length of 40 bases and an identity threshold of 90%.

As the minimum interspecific divergence was 10.7% in this study based on the COI gene, this is enough to exceed a standard sequence threshold in G. salicornia.