Sentence examples for minimum sequence of from inspiring English sources

It has been estimated that a minimum sequence of 13 14 base pairing nucleotides is required for the specific targeting of an unique RNA species in the human transcriptome [35].

Lemma 2. If the affine cost for duplications is non-decreasing and Φ is non-decreasing and obeys the triangle inequality then the cost of a minimum sequence of duplicate and delete operations that generates a target string y from a source string x is equal to the cost of a minimum sequence of duplicate-delete operations that generates y from x. Proof.

The problem of computing the minimum sequence of operations that transforms one genome into another – which is equivalent to the problem of sorting a permutation into the identity permutation – is a well-studied problem that finds application in comparative genomics.

The duplication-inversion-deletion distance from a source string x to a target string y is the cost of a minimum sequence of duplicate and duplicate-invert operations from x and deletion operations, in any order, that generates y.

In order to find the optimal (i.e. minimum) sequence of duplicate operations that generate y, we must consider all subsequences of y that could have been generated by a single duplicate operation.

Having the distance measure defined between each pair of nodes in the input image, the task of finding the optimal path is simply that of finding a minimum sequence of distances from end to end.

First MIRA3 [ 76] was used with the assembly settings of minimum sequence overlap of 30 bp and minimum percentage overlap identity of 80%.

The EST sequences were assembled into contigs using CAP3 [ 9] under high stringency parameters of a minimum sequence identity of 98%; minimum overlap length of 40 nt; gap penalty, 6; match value, 2; mismatch penalty (−5).

The default assembly options of minimum read length of 40 nucleotides, minimum sequence overlap of 40 nucleotides and a minimum relative overlap score of 80% of similarity were used.

Assembly for contigs was performed with match size of 50, minimum match percentage of 97, minimum sequence length of 100.

NAHR-mediated events were inferred from a search of homologous blocks in the areas around the breakpoints (+/−500 bp) of minimum length of 30 bp and minimum sequence identity of 85%.