Sentence examples for minimum sequence complexity from inspiring English sources

First, we study the minimum sequence complexity that can reserve the necessary structural information for detection of distantly related homologues.

For the v2 array design, which includes bacterial probes, an additional minimum sequence complexity constraint was enforced, requiring a trimer frequency entropy of at least 4.5 (calculation described below).

It is shown that in an SBN, the complexity to compute the state transition matrix is O nL2 n ), where L is a factor related to the minimum sequence length required for obtaining an evaluation accuracy.

(D.5) is the minimum sequence among sequences in and having the first symbol one at position.

Since BLAST excludes regions with low sequence complexity by default, the sequence complexity filter was explicitly disabled (option '-F F').

The summary statistics provided include the number of sequences and number of bases in the FASTA or FASTQ file, tables with minimum, maximum, range, mean, standard deviation and mode for read length and GC content, charts for read length distribution, GC content distribution, quality scores, sequence complexity, sequence duplicates, occurrence of Ns and poly-A/T tails.

(However, not all regions of low sequence complexity are disordered).

We defined a number of criteria to identify orthologous sequences including minimum alignment length (200 bp), minimum sequence identity (90%), and minimum alignment proportion (> 80% of shorter sequence).

Finally, sequences were examined for interspersed repeats and regions of low sequence complexity using RepeatMasker.

We also found a high sequence complexity for all sequencing libraries (Additional file 1: Table S1).

Several other retroviruses and retrotransposons have similar sequence complexities.