Sentence examples for minimum repeat length from inspiring English sources

SSR were identified using the MISA MicroSatellite identification tool (http://pgrc.ipk-gatersleben.de/misa/), defining a minimum repeat length criteria of six repeated units for dinucleotides, five repeated units for tri, tetra, penta and hexanucleotides.

We then extracted di-, tetra-,etra-, and penta-nucleotide repeats with a minimum repeat length of six, respectively.

We used this program to find matching sequences of a minimum repeat length of 100 bp and a minimum consensus of 95%.

Using the program Sputnik [ 22], we identified 552 di-, tetra-,etra-, and penta-nucleotide repeats with a minimum repeat length of six, respectively (Additional file 3).

The unassembled sequences were screened for di-, tetra-,etra-, and pentanucleotide microsatellites using MSATCOMMANDER 1.0.2 alpha (Rozen and Skaletsky, 1999; Faircloth, 2008), ensuring a minimum repeat length of 8 bp for dinucleotides and 6 bp for all others.

Our search for repeat motifs revealed 521 sequences containing some such motif from the total set of 52,053 sequences (using a minimum repeat length of seven, Additional file 2).

Simple sequence repeats (SSRs) were searched for using the msatcommander 0.8.2 software http://code.google.com/p/msatcommander/; the minimum repeat lengths considered were: 10 bp (mononucleotides), 12 bp (di- and trinucleotides), 16 bp (tetranucleotides), 20 bp (pentanucleotides) and 24 bp (hexanucleotides).

Using BLAST [ 69] annotation results we searched for genes and transposable elements, also using Perfect Microsatellite Repeat Finder (http://sgdp.iop.kcl.ac.uk/nikammar/repeatfinder.html) with default parameters (minimum number of repeats = 3, minimum repeat unit length = 2 and maximum repeat unit length = 100).

The minimum repeat unit length was set to 2 and the maximum repeat unit length to 4. The minimum microsatellite length was set to 24.

Specifically, 300 CUG repeats were found to be the minimum repeat tract length at which an overt pathology was detected in mice.

A minimum glutamine repeat length of five was used since Karlin [ 94] determined that for a "typical" protein of 400 residues and average composition, a run of an individual amino acid is statistically significant if it is five or more residues long [ 94].