Sentence examples for minimum read depth from inspiring English sources

Colors refer to the minimum read depth per sample.

SNP calls were made with SAMtools62 mpileup (version 0.1.18), requiring a minimum read depth of 5 and at least one read on each strand.

SNPs were filtered using maq.pl SNPfilter with minimum read depth (-d) of 20, minimum consensus quality (-q) of 20, and minimum adjacent consensus quality (-n) of 20.

For our analysis we used the default settings of each program, which for 'galign' required a mutant/wild-type reads ratio of 3, and a minimum mutant read of 2. For 'Maq', we used the "SNPfilter" function with its default settings requiring a minimum read depth of 3 reads to identify what the software considered reliable reads.

Consequently, the minimum read depth parameter was fixed to 60.

SNPs were called with a minimum read depth of 3 as a requirement.

Variants detected by GATK were filtered for a minimum read depth of 50.

High confidence variants must have a minimum read depth of 30X and 0.1 maf.

Additional file 7: Coverage at 100x minimum read depth and effect on coverage at 25 and 30 PCR cycles.

The reference genome coverage of all the strains ranged from 86 - 94% with minimum read depth of 10.

All SNPs were filtered by minimum read depth to avoid the analysis of false SNPs due to sequencing errors.