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For initial genome sequence pairwise alignment, a default setting value of 70% was used as the minimum percent conservation identity that must be maintained over the window size 11 for a region (> 50 bp) to be considered conserved.
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Earlier breakthrough time and saturation time were appeared for higher flow rate, resulting in low uptake and minimum percent removal.
Also, there was no option for setting minimum percent similarity allowed.
Clustering was performed using the following variable parameters: minimum percent identity for overlaps (94%), minimum overlap length (30 nt) and maximum length of unmatched overhangs (30 nt).
Specifically, the percent conservation of E. cuniculi and E. bieneusi to A. locustae were 13% and 12%, respectively, while the conservation between E. cuniculi and E. bieneusi to one another was 16%.
The average of the percent DO from the 5 points taken within a zone was calculated to get the average maximum or minimum percent DO for the given sample zone (i.e. coral, algae, or interface).
7. Minimum percent capable population (from 3D SSPP), i.e., worker gender specific percent capable population from a task that produces the minimum percent capable population.
The specific parameters used for the analysis were: E-value: 1e-05; minimum percent identity: 30%; algorithm: by present/absent homologs; minimum taxon percent with homologs: 100%.
Reads were mapped back to the unigenes with a minimum percent identity = 0.9 and minimum length = 0.5.
Three main parameters are provided: the minimum percent identity, merge threshold (bp) and link threshold (bp).
In some alignments, a bar graph below represents the percent conservation at individual sites in the alignment.
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