Sentence examples for minimum overlap lengths from inspiring English sources

De novo assemblies were run using the transcriptome (-cdna) option, minimum read length (-minlen) of 40 nt, isotig length threshold (-icl) of 40 nt, a large contig threshold (-l) of 100 nt, plus a factorial arrangement of the following parameters: minimum overlap lengths of 35 and 45 nt; alignment difference scores of -2 and -6; and minimum overlap identities of 82%to98%82%to98%

Clustering was performed using the following variable parameters: minimum percent identity for overlaps (94%), minimum overlap length (30 nt) and maximum length of unmatched overhangs (30 nt).

We took all of the 454 reads as singletons (i.e. neglecting the paired end information) and assembled them using Roche's assembler (Newbler) with default parameters (minimum overlap length 40, minimum overlap identity 90%).

Parameters used were a minimum overlap length of 30 bp with 94% sequence identity.

The assembly parameters were a minimum overlap length of 40 bp and a minimum overlap identity of 95%.

The assembly parameters used were minimum overlap length of 40 bp and minimum overlap identity of 95%.

98.01% of the reads were assembled into 314 contigs using the Newbler software with the default parameters (minimum overlap length 40, minimum overlap identity 90%).

CAP3 was run with default parameters (minimum overlap length of 40 bp and 95%% minimum sequence identity).

The clusters were created using stringent parameters (minimum overlap length of 40 bp and 95% minimum sequence identity).

The 7846 raw DArT sequences were assembled using Sequencher with a minimum overlap length of 50 nucleotides.

Assembling parameter for the Newbler assembly was set as: large or complex genome, reads limited to one contig, minimum overlap length 50 bp, minimum overlap identity 95%.