Sentence examples for minimum overlap identity from inspiring English sources

We took all of the 454 reads as singletons (i.e. neglecting the paired end information) and assembled them using Roche's assembler (Newbler) with default parameters (minimum overlap length 40, minimum overlap identity 90%).

These parameters include a minimum overlap of 40 bp and a minimum overlap identity of 90%.

The assembled parameters were minimum overlap identity 98% and minimum overlap 50 bp.

The assembly parameters were a minimum overlap length of 40 bp and a minimum overlap identity of 95%.

The assembly parameters used were minimum overlap length of 40 bp and minimum overlap identity of 95%.

Assembly parameters were as follows: the minimum contig length was set at 200 bp, the minimum overlap length was 60 bp, and the minimum overlap identity was 95%.

De novo assemblies were run using the transcriptome (-cdna) option, minimum read length (-minlen) of 40 nt, isotig length threshold (-icl) of 40 nt, a large contig threshold (-l) of 100 nt, plus a factorial arrangement of the following parameters: minimum overlap lengths of 35 and 45 nt; alignment difference scores of -2 and -6; and minimum overlap identities of 82%to98%82%to98%

A pool of the processed reads from both cDNA libraries (TV1 and TV6) were clustered using the MIRA v2.9.26x3 assembler with the " de novo, normal, EST, 454" parameters, specifying a minimum read length of 40 nt, a minimum sequence overlap of 40 nt, and a minimum percentage overlap identity of 80%.

First MIRA3 [ 76] was used with the assembly settings of minimum sequence overlap of 30 bp and minimum percentage overlap identity of 80%.

Transcript assemblies (TA) are constructed using the TIGR Gene Indices Clustering TGICLL) pipeline (3) with a minimum sequence overlap identity between two sequences of 95%, a minimum overlap between sequences of 50 bp and a maximum overhang of non-overlapping sequences of 20 bp.

In order to make the results equivalent to those from other OLC assemblers, the parameters were set to a minimum contig overlap length MIN_LEN = (60/100) and a minimum contig overlap identity percentage MIN_IDENT = (95/98).