Sentence examples for minimum overlap between from inspiring English sources
Transcript assemblies (TA) are constructed using the TIGR Gene Indices Clustering TGICLL) pipeline (3) with a minimum sequence overlap identity between two sequences of 95%, a minimum overlap between sequences of 50 bp and a maximum overhang of non-overlapping sequences of 20 bp.
As is evident from minimum overlap between the red patches and the fluorescence of Golgi-localized GFP (Fig. 2a, bottom panels), the Golgi apparatus does not represent the red patches in cytoplasm.
The minimum overlap between adapter and read was set to 6 bases.
The panning matrix estimation procedure is based on the discrimination of time-frequency zones with minimum overlap between the concurrent instruments, which is performed by using the output of an automatic transcription stage.
In the long march procedure, a step size can be selected that creates the minimum overlap between adjacent steps necessary for correct assembly given the read length and dataset size.
These correspond to 660,946 recognized SUBSTRUCTURE entries and to 4,964,487 non-hydrogen-atom locations in the KEGG [18] and NCI [19], [20] databases, which have been constructed for different purposes (containing mostly endogeneous compounds and xenobiotics, respectively) and have minimum overlap between them.
This metric gives the number of minimum overlaps between any two channel sequences in a SH-based CCC.
The user also sets values for the minimum overlap required between sequences (usually set to a high [> = 90%] value for barcode data where all sequences derive from the same PCR product) and a 'gathering' low megablast identity filter parameter (again usually set to a high [>95%] value) permitting the inclusion of BLAST matches that are just above the maximum cutoff value in the NW stage.
Minimum overlap required between DMRs = 100 nt.
The reads were assembled using short-read transcriptome assembler Trans-Abyss (Birol et al., 2009) version 1.2.0, using k-mer sizes of 26 and 49 the minimum overlap length between two reads to be combined in a contig.
However, all of those cases corresponded to positions where adjacent reads overlapped by only ~25nt, the specified minimum overlap allowed between two sequences for collapse into a contig for our assembly (see Materials and Methods; Figure 4B, positions ~23k, ~54k, ~88k, ~91k, ~94k).
