Sentence examples for minimum motif size from inspiring English sources

Large sizes for phylogenetic footprints in grasses are consistent with a previous study of 288 maize and rice pairwise and 56 rice, maize and sorghum three-way comparisons, in which a minimum motif size ≥ 20 bp was found to be significant [ 19].

Advanced search module can filter repeats of a particular size (mono, tri, tetra, etc.,); can get repeats of a particular pattern (CAG, Poly A etc).; can set the minimum repeat number of each motif size; and can filter repeats of only coding or non-coding regions.

RepeatFinder procedure executes, in parallel, for each motif size within the range of minimum and maximum values, to identify sequences with all motif lengths in this range of values in the FASTA file.

Motif size search ranged from mono- to tridecanucleotides, with minimum repeat units set as follows: mononucleotides ≥10; di-, tetra-,etrand penta-, and hexanucleotides ≥5; the remaining repeat motifs ≥5.

Programs written in PERL (available upon request) are used to count the number, length, location, and motif of all repeating motif size 1-100 bps in the Daphnia n50 scaffolds, with a minimum repeat number of 3 repeats.

For example, there are 13 motif classes for motif size M = 3.

For each motif size M there is a limited set of distinct motif classes.

In total, we retrieve 11 network motifs for motif size 3, 82 motifs with motif size 4, and 778 motifs with motif size 5.

The parameters were set as follows: maximum numbers of different motifs, 30; minimum motif width, 6; maximum motif width, 50.

Range of motif widths was set to 4 and 20 as the minimum motif width and maximum motif width, respectively.

The Improbizer automatically determines optimal motif size.