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A methodology was developed that allows to analytically determine a first estimate for the best minimum module size configuration – only based on the desorption rate of the basic material.
Modules were identified with dynamic tree cut with minimum module size = 20, using the hybrid method.
We set the minimum module size to fifteen, reassignThreshold to zero, and pamRespectsDendro to false.
To ensure a suitable number of genes for next-step analysis, we set the minimum module size as 10.
Our modules were defined using the dynamicCutTree function and TOMType "signed" with a minimum module size of 100.
The minimum module size was set to 30 and the cut-off for merging modules was set to 0.25.
Similar(37)
Modules were detected using a dynamic tree-cutting algorithm (hybrid mode, minimal module size of 100).
The test statistic can be chosen as the total number of genes assigned to consensus modules or it can be based on module sizes (e.g., the minimum consensus module size).
At this step size, the maximum module size was 54 (module size (3 > size ≤ 54).
The maximum module size at this step was 160 (module size (3 > size ≤ 160).
module size, suitable for operation in the filtration test stand.
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