Let is the minimum matching cost between two subsequences and.
In general, as the minimum matching size increases, specificity rises and sensitivity falls.
Changing the minimum match length in the compression phase would likely address this issue, yet likely at the expense of a significant fraction of the runtime performance gains.
All chromatograms were matched against this reference chromatogram with a minimum match factor of 800.
Assembly parameters of 88% minimum match with 17 nt minimum overlap were used to define unique spacers and resulting contigs were spacer-spacer matches.
with ProAssembler default settings (match size = 25, minimum match percentage = 80, match spacing 150, minimum sequence length = 100, gap penalty = 0, gap length penalty = 0.70, and maximum mismatch end bases = 15).
Cross-match was then used to mask vector sequence in each read (minimum match of 10, minimum score of 20).
Assembly for contigs was performed with match size of 50, minimum match percentage of 97, minimum sequence length of 100.
A maximum for the false match rate F' can be estimated using an anticipated minimum match rate.
Addresses were matched using a spelling sensitivity of 70 and a minimum match score of 65.
