Sentence examples for minimum match percentage from inspiring English sources

Clustering was performed using CAP3 [24] (minimum overlap 30; minimum match percentage 90%; mismatch +1 −1) with previous masking using DUST [25] and TGICL [26].

The DNA sequences were aligned using the SeqMan II (DNAstar) and first assembled at a minimum match percentage of 60%, gap lengths 3200, maximum match size 50 bp.

High-stringency assemblies of the viral metagenome were performed using the SeqMan program in the Lasergene software suite (www.dnastar.com/products/lasergene.php) with a minimum overlap of 30 and minimum match percentage of 95%.

with ProAssembler default settings (match size = 25, minimum match percentage = 80, match spacing 150, minimum sequence length = 100, gap penalty = 0, gap length penalty = 0.70, and maximum mismatch end bases = 15).

The remaining 1037 sequences were assembled into clusters (≥two ESTs) and singletons (one EST) based on the following criteria: sequence match size of 20 bp, minimum match percentage of 85%, 0.00 gap opening penalty, 0.7 gap length penalty, and minimum sequence length of 70 bp.

These datasets were then assembled using the SeqMan Pro assembler of the Lasergene software package v8.0.2 (DNASTAR, Madison USA) with the following program parameters: match size, 50bp; minimum match percentage, 80%; minimum sequence length, 40 bp; gap length penalty, 0.70 and maximum mismatch end bases, 15.

using default parameters with a minimum match percentage of 95% for sequence assembly.

To explore the effects of parameter settings on the outcome of assemblies, we ran de novo assemblies with a range of minimum match percentages (85%, 90% and 95%), match lengths (19, 23, and 25 bp), and gap penalties (30 and 50) (Table 1).

Results from assemblies run in Seqman Ngen with different starting values for gap penalty, minimum match size, and mimimum match percentage.

Trimming of the sequences were first performed from two ends until the last 25 bases containing less than five ambiguities, and then that of the vectors and adaptors were performed under the parameters that minimum overlap and approximate match percentage to consider as contamination were set to 8 and 99%, respectively.

For this assembly, we used a minimum match size of 19 nucleotides, match percentage of 88%, mismatch penalty of 18, and gap penalty of 30.