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We correlate a prefix of C (of minimum length) with a prefix of o i, o i +1,..., o m such that the two prefix sums are nearly the same (within σ).
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In particular, all repeats of minimum length 100 with at least 80% sequence identity are shown.
ORFs of minimum length associated with segments of compositional periodicity are then identified when present, searching for the start-of-translation codon closest to the 5′-end of the region of periodicity.
The diameter of the rod is estimated to be 20 25 nm with minimum length of 150 200 nm with an aspect ratio ~8.
The first dataset contains alignments with higher sequence conservation, MZ44-1: multiz score from 1M to 4M, at least 20 species per alignment with minimum length 200 nt, and with n=3431 alignments.
As NAST server limits each submission to 500 pyrotags, an individual library was split into smaller subsets comprising 500 pyrotags, aligned with minimum length set at 200 bp, and with other settings kept at their default values [41].
Prior to threading, the ERev sequence was fragmented into overlapping segments with a minimum length of 60 residues and with starting positions every 5 residues.
After indexing and trimming linker sequences, reads with a minimum length of 15 nt and with <3 terminal mismatches in the sequence were sorted and counted for the following analysis.
A total of 260,793 contigs have putative ORFs detected with minimum length of 30 amino acids, and 16,688 of which possess putative ORFs with minimum length of 100 amino acids (Additional file 2).
As shown in Figure 10A, with the increase of sequencing depth, the number of contigs with minimum length of 200 bp increased.
Furthermore, data is routed unblocked over paths with minimum length.
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