Sentence examples for minimum identity threshold from inspiring English sources

The minimum identity threshold was set to 98%.

These were subsequently filtered, such that the length of the aligned region (L) was ≥80% of the length of the longer protein, and the identity of the aligned region was greater than or equal to a minimum identity threshold.

Since the exact number of genes/transcripts in C. costata is unknown, we blasted our database against D. melanogaster transcriptome in order to find putative orthologous genes using a minimum identity threshold of 50%% and an E-value below 1e-10.

We suspect that setting minimum identity thresholds for IGC to occur (see File S1) may cause patterning inside SDs.

In both cases, sequences were used as an input file for EGN [ 80] choosing the following options: BLASTn E-value <1e-5; minimum hit identity threshold 60%; minimum hit length 40% of the smallest homolog.

The Ribosomal Database Project Naïve Bayesian rRNA classifier was used with a minimum percent identity threshold of 60% for taxonomic assignment (Li et al. 2014).

One implementation of the algorithm clusters the sequences into the first cluster for which the minimum sequence identity threshold is satisfied.

The transcriptomes of A. deserti and A. tequilana were compared using reciprocal BLAT analyses [ 33] using a minimum sequence identity threshold of 90%.

A minimum percent nucleotide identity threshold of 70% and 20 bp as a minimal length criterion were considered significant in VISTA [ 18] for our analyses.

We selected a minimum of 50% identity threshold since this degree of sequence identity is sufficiently high to guarantee that in most cases the interconnected proteins perform the same function (i.e., they are encoded for by orthologous genes) [ 37, 38].

Hybrid assemblies combining Sanger and 454 reads were generated using the Newbler Assembler version 1.1.03.19 with a 50 bp minimum match length and 90% identity threshold as previously described [18].