Sentence examples for minimum identity of from inspiring English sources
If all paths spell pair-wise identical sequences (minimum identity of 80%), then one of them is returned.
The number of exons for all genes was estimated using Scipio (version 1.4.1 80 using default parameters (minimum identity of 90% and coverage of 60%).
Raw, unassembled reads were annotated in MG-RAST using SEED, with a maximum e-value of 1 × 10−3, a minimum identity of 50% and a minimum identity cutoff of 15.
All reads were size-trimmed and quality-trimmed (maximum number of ambiguities: 2; Quality scores: 0.05) and then mapped to the K. stuttgartiensis genome (accession number PRJNA16685) using RNA-Seq analysis tool with a minimum length of 95% and a minimum identity of 95%.
To examine the ncRNA conservation between Eucalyptus and other plant genomes, the Eucalyptus ncRNA candidate sequences obtained from the Infernal search were used as queries to search against the genome sequences listed above using BLAT51 with a minimum coverage (that is, minimum fraction of query that must be aligned) of 80% and a minimum identity of 60%.
The parameters for inclusion were a maximum e-value cutoff of 1e-05, a minimum identity of 60%, and a minimum alignment length of 15.
First, using a self-BLAST and an SGN Perl script (precluster.pl), we implemented a pre-clustering phase of the EST sequences with a minimum identity percentage of 90% and a minimum alignment length of 30 bp.
However, to increase the number of matches analysed, a minimum identity level of 80% was retained.
The e-value threshold was 1e−15 with a minimum identity percentage of 70%.
The best match for each gene from each Miscanthus assembly was aligned using Sequencher [Gene Codes Corporation version 5.0.1] with a minimum identity cutoff of 90%.
Since the exact number of genes/transcripts in C. costata is unknown, we blasted our database against D. melanogaster transcriptome in order to find putative orthologous genes using a minimum identity threshold of 50%% and an E-value below 1e-10.
