Sentence examples for minimum hit fraction from inspiring English sources

Clearly the stringency of overlap set by the minimum hit fraction was too low.

When we increased the minimum hit fraction the size of the largest cluster was reduced and the data became more fragmented, as reflected in the increasing number of clusters (Table 2), but also more homogeneous within clusters.

Clustering of sequences implemented with BLAST and single-linkage clustering produced a wide diversity of cluster sets (Table 2) depending on how we set the minimum hit fraction, which is the set union of the sets of locally aligned sites (hits) reported by BLAST.

Therefore, a pair of sequences was considered as a hit if it was reported as a BLAST hit and it surpassed a minimum "hit fraction" of 0.70 for each sequence, i.e., at least 70% of each sequence must align to the other sequence with E values lower than the threshold – though not necessarily in a single contiguous hit.

The transcripts were compared to the standard genes using Blat [ 17], with a minimum hit score of 200, in order to ensure significant hits.

The minimum hit length is specified by the -length option (200 in this study), the minimum identity by the -pctid option (94.0 used in this study).

In both cases, sequences were used as an input file for EGN [ 80] choosing the following options: BLASTn E-value <1e-5; minimum hit identity threshold 60%; minimum hit length 40% of the smallest homolog.

When we chose 0.65 as the minimum hit-rate, we got 1261 proteins with predicted locations.

This results in the minimum byte hit rate each request can produce.

Try entering the numerator's coefficient, hitting the fraction button, then entering the denominator's coefficient.

Quantitative analysis was performed using CLCbio (CLC Genomics Workbench 4.8, parameter settings: minimum length fraction, 0.5; minimum similarity fraction, 0.95; maximum number of hits for a read, 10).