Sentence examples for minimum fold changes from inspiring English sources

Experimental results on publicly available datasets both with and without replicates show that IsoDE has robust performance over a wide range of technologies, sequencing depths, and minimum fold changes.

Comparative analysis of the primary transcriptome of the cyanobacterium Anabaena sp. PCC 7120 revealed >10,000 TSSs active during the differentiation of N2-fixing heterocysts, from which >900 TSSs exhibited minimum fold changes of eight, suggesting a large number of hitherto unidentified regulators of cell differentiation and N2-fixation.

For Picciotto vs Xu mutant analyses the minimum fold change was increased to 2.0.

In addition, we selected only those transcripts displaying a minimum fold change threshold of +1.2.

Cutoffs for statistical significance were a Benjamini- Hochberg corrected False Discovery Rate (FDR) <0.05 and a minimum fold change >1.8.

Figure 2 shows the effect of introduced fold change (Fd), restriction on the minimum fold change (Fa) and expression level (Em) on the Sensitivity and Precision of the differential expression analysis.

Among the 476 differentially expressed transcripts (identified using a minimum fold change of ±1.5 and corrected p value <0.05) 149 were expressed at higher levels in Sod2-/ erythroblasts, while 327 were down-regulated.

We reproduced this analysis and extended it to more datasets, considering genes that show a minimum fold change of 1.5 and pvalue of 0.05 as differentially expressed between ESCs and iPSCs.

In effect, the scale of the data reduces the otherwise substantial requirements for a minimum fold change filter often used to circumvent false positive detection when using small numbers of samples.

For PCA clustering, genes that were differentially expressed in any of the three seedling treatments relative to the control (empirical Bayes test, no minimum fold change cut off applied; 11057 contigs) were grouped based on condition using the 'cluster.samples' function in smida (R v.2.7.1).

This led to a set of 839 probes that have annotation information and then this set was subjected to a minimum fold change criteria of 1.5 between any of the three possible comparisons: 5 month vs. 1.5 months, 12 months vs. 1.5 months and 12 months vs. 5 months.