Sentence examples for minimum evolution phase from inspiring English sources

For 15,011 16s RNAs, RAxML 7.2.5's parsimony and FastTree's minimum evolution phase take about the same time (data not shown).

As shown in Table 1, the minimum-evolution phase of FastTree, which uses linear SPRs, is not as accurate as FastME 2, a minimum-evolution method that performs exhaustive SPR moves [8], [12].

FastME computes distances between internal nodes differently from the minimum-evolution phase of FastTree: FastME uses averages of distances between sequences, while FastTree uses distances between profiles, which are averages of sequences.

The alternative methods of phylogenetic tree construction, minimum evolution and maximum likelihood, were tested, but the support for the minimum evolution tree was not sufficient (data not shown).

Four methods were employed, Neighbor-joining (NJ), UPGMA, Maximum parsimony, and Minimum evolution.

The phylogenetic tree was produced by the minimum evolution method and 1000 bootstrap iteration.

As expected, the minimum evolution score was larger (2.31436).

Minimum evolution trees were generated using the program Mega2 [ 26].

Simulations have three phases, the burn-in phase, the structured phase, and the concerted evolution phase.

Figure 1a shows a minimum evolution tree of the 40 post-vaccination era isolates.

A more recent minimum evolution method (43) was employed to overcome these drawbacks.