Sentence examples for minimum evolution methods from inspiring English sources
Instead, the strains branched deeply within the Proteobacteria as shown in a phylogenetic tree created by maximum likelihood [19], Figure 3. Very similar tree topologies were found by neighbor-joining, maximum parsimony or minimum evolution methods using MEGA3 [20](data not shown).
Phylogenetic relationships were determined by using the Jukes-Cantor algorithm combined with either neighbor-joining (NJ) or Minimum Evolution methods implemented in MEGA.
To further control the reliability of the maximum likelihood approach, the phylogenetic tree calculations were repeated using the neighbor joining and minimum evolution methods implemented in MEGA6.
The neighbour-joining and minimum evolution methods were then used to plot the phylogenetic trees (pair-wise deletion, JonesTaylor-Thornton matrix and enter range activated sites (gamma-number 2.5).
The alignment produced (length 98, with 99 informative sites) was used for phylogenetic analysis using the neighbour joining, maximum parsimony and minimum evolution methods with 1000 bootstrap replicates in the MEGA 3.1 phylogenetic programme [ 78].
Neighbor-joining and minimum evolution methods in MEGA4 (http://www.megasoftware.net) were used to construct the trees along with multiple substitution models, including p-distance and Jukes-Cantor; all methods gave similar results.
The bootstrap consensus tree inferred from 500 replicates was constructed to represent the evolutionary history of the HKT genes by using the Minimum Evolution Method in MEGA5 (Tamura et al. 2011).
The phylogenetic tree was produced by the minimum evolution method and 1000 bootstrap iteration.
Phylograms were constructed by Mega4.1 using the Minimum Evolution method with a bootstrap test based on 5000 replicates, and the Poisson correction method [5].
Phylogenetic trees based on multiple alignments of nucleotide sequences were constructed using the minimum evolution method as implemented in the MEGA program with default parameters.
The phylogram represents a consensus tree based on 100 bootstrap iterations, calculated by the Minimum Evolution method under default parameters [66].
