Sentence examples for minimum evolution criterion from inspiring English sources

The minimum evolution criterion was used and branch lengths were allowed to be negative except when calculating tree scores.

The minimum evolution criterion was used by applying maximum likelihood distances estimated with the model chosen by Modeltest in the neighbor-joining analysis.

Phylogenetic trees from the post-vaccination data set and the two data sets combined were built using MEGA 2.1 [ 25] and the minimum evolution criterion.

The modified NJst method, called the MEst method, was implemented in R [ 73] with an external call to fastME [ 76] for the calculation of the minimum evolution criterion.

Pairwise TREx distances were used to generate lengths for the branches connecting the swine paralogs using the minimum evolution criterion in PAUP.

From this point of view, NJ is "optimal" when the algorithm outputs the tree which minimizes the balanced minimum evolution criterion.

A distance-based tree was constructed under minimum evolution criteria [ 34].

Neighbor-joining was used to make phylogenetic trees based on these matrices, employing the minimum evolution criteria in PAUP [ 54].

The close-neighbour-interchange heuristic search algorithms for finding the optimal tree under the minimum evolution criteria were used, where a temporary neighbour-joining tree [ 88] was generated for comparison [ 89], using dynamic criteria [ 90].

Where FastTree 1 used nearest-neighbor interchanges (NNIs) and the minimum-evolution criterion to improve the tree, FastTree 2 adds minimum-evolution subtree-pruning-regrafting (SPRs) and maximum-likelihood NNIs.

We assessed the potential impact on the phylogenetic analyses of heterogeneity in sequence nucleotide composition by constructing preliminary phylogenies with the Neighbor-Joining method [62], using the minimum evolution (ME) criterion based on either LogDet [63] or the ML distances between alleles (with all parameters estimated from the data).