Sentence examples for minimum evolution analysis from inspiring English sources

Unrooted phylogenetic trees were generated from nucleotide sequences based on the complete open reading frame of all eight gene segments using minimum evolution analysis with maximum composite likelihood and the Tamura-Nei model [24] with 1000 bootstrapping replications in Molecular Evolutionary Genetics Analysis MEGAA, version 4. 1 beta).

Phylogenetic reconstruction based on cgMLST genes was performed by using minimum evolution analysis after discarding putative homologous recombination biases (see Supplemental Methods section at http://bigsdb.web.pasteur.fr/klebsiella/archives/Bialek_TechnicalAppendix.pdf).pdf

para-adiacens" strain TKT1 with bootstraps of 94%, 84%and80%0% in neighbour-joining, parsimony and minimum evolution analysis, supporting the node separating them from their closest neighbour G. adiacens.

When a minimum evolution analysis was performed on the concatenated sequences of the 2 strains and compared with Australian and Thai strains on the MLST website (http://bpseudomallei.mlst.net/), the New Caledonian strains clustered well within groups of Australian sequence types.

After neighbour joining, maximum parsimony and minimum evolution phylogenetic analysis, the protostome receptors and Ciona CinS93, CinS50 and CinS273 genes tended to cluster with the deuterostome CRF and CAL/CGRP receptor family members.

The minimum evolution tree based on the analysis of the mitochondrial cytochrome oxydase I (COI) sequences did not resolve the relationships among Pteria, Pinctada, and Isognomon [ 17].

For example, the insertion at locus 154966 suggests that the lynx lineage is more recently derived than the puma lineage, which is consistent with prior minimum evolution, maximum parsimony and Bayesian analysis, yet inconsistent with maximum likelihood reconstructions [ 66].

The phylogenetic analysis using different methods (Minimum Evolution, Maximum, Neighbor-Joining and UPGMA, with or without an out group - PGRP-S1) show the same structure (data not shown).

HW performed the Phylogenetic tree construction with Minimum Evolution and Maximum Parsimony methods and aided in data analysis.

The Minimum evolution algorithm was applied based on the Nucleotide Maximum Composite Likelihood analysis of all positions.

The alignment produced (length 98, with 99 informative sites) was used for phylogenetic analysis using the neighbour joining, maximum parsimony and minimum evolution methods with 1000 bootstrap replicates in the MEGA 3.1 phylogenetic programme [ 78].