Sentence examples for minimum cutoff length from inspiring English sources

To estimate a minimum cutoff length for COX2_TM prediction, we generated the distribution of upstream sequence length (length 5' of the COX2 domain) for all sequences whose architecture includes the COX2_TM domain.

Using minimum cutoffs of 90% length and 70% nucleotide (nt) identity, 663 copies were found by BLAST using the published Juan-A sequence as the query.

Using criteria similar to those developed by Gu et al. (2002), we eliminated pairs whose alignment length was less than 80% of the total length of protein and, for peptides of length ≥150 amino acid residues, a minimum cutoff for percent sequence identity (I) of 30% was used.

ANI was calculated as defined before (Konstantinidis and Tiedje 2005), using a minimum cutoff of 50% identity and 70% of the length of the query gene.

The criteria used to assign function to a CDS were (1) a minimum cutoff of 40% identity and 60% coverage of the protein length and (2) at least two best hits among the COG, KEGG, or nr protein database.

A minimum cutoff value close to 0.9 is suggested for TFI and CFI [68].

Both TFI and CFI values also exceed the minimum cutoff value of 0.90.

Therefore, we start with that level as a minimum cutoff for designating a gene as expressed.

Nevertheless, we maintained a minimum cutoff of 3 primary mortality rates for calculation of mean.

We compared the data to M5NR using the maximum cutoff E-value of 1E−5; we used 60% as the minimum identity cutoff, and the minimum alignment length cutoff of 15, measured in base pairs for RNA databases and in amino acids for proteins.

We retrieved 21,353 CGIs from the Ensembl database, which defines CGIs using the following cutoffs; minimum length is 400 bps long; minimum GC content is 50%; and minimum of observed over expected CpG ratio of 0.6.