Sentence examples for minimum coverage threshold from inspiring English sources

Lowering the minimum coverage threshold to 50%% increased mapping by between 2 % and 15%%.

For the purposes of the current study, a minimum coverage threshold of 5× was used for STR allele determination.

The E-value threshold was set at 1E-3 for MSA generation and the minimum coverage threshold for MSA hits was set at 20%.

In order to assure sufficient power to detect variants, the minimum coverage threshold of a coding base was set to 30.

In order to distinguish between homozygous and heterozygous genotypes reliably, we required a minimum coverage threshold and a coverage-dependent allele frequency cutoff.

Additionally, non-specific matches and broken pairs were ignored, and the program enforced a 20-fold minimum coverage threshold and 90% minimum variant frequency.

Candidate gene duplicate pairs obtained in the above GH analyses were also filtered using minimum coverage thresholds, where query and subject sequences were required to show at least 70% coverage, prior to forming single-linkage clustering gene families.

Calculating the probability of NCO GCs per marker at a series of minimum coverage thresholds revealed that beyond a minimal coverage of 10, the frequency of NCO GC remained stable.

These results, in conjunction with the observation that the median exon-exon read coverage across all strains was ~7.5, led us to define a minimum read coverage threshold of 10.

We also determined that a minimum k-mer coverage threshold of two is suitable for de novo assembly as this removes the majority of sequencing errors (Additional file 4).

Despite the observation that many genotype calls are supported by >20 reads, the number of SNPs for downstream analysis declines rapidly as the minimum depth of coverage threshold is increased from 1 to 10 while implementing a missing data threshold of 20%.