Sentence examples for minimum coverage required from inspiring English sources

Coverage simulations were performed to ascertain the presence of features emerging from non-saturating conditions and to determine the minimum coverage required by each platform to detect the correct number of SNPs.

The minimum coverage required for variant calling was set to 5000 for all algorithms.

To determine the minimum coverage required to detect and assemble the chloroplast genome of Toona ciliata data were sub-sampled to 50%, 25%, 12.5% of the original reads.

The current estimate for minimum coverage required for accurate HLA typing by our HLA caller is 20 reads, whereas our samples received on average >100 reads per exon.

Furthermore, Galan et al. [ 13] used a second threshold T2 (minimum frequency of a variant within an individual) for the minimum coverage required to define a variant as a true allele.

SAM alignments calculated for each contig in the assembly phase were input into Freebayes with the following parameters: probability cut-off of 0.9, 5 as the minimum coverage required to process a site, and each SNP must be supported by at least 2 reads.

The minimum coverages required should be specified in the proposed amendment, Mr. Zuckerman said, and, for the benefit of those who do not already carry such coverage, estimates of one or more premium quotes for the amount of minimum coverage should also be made available.

In other words, the objective is to predict the minimum vaccination coverage required to reduce the mean number of secondary infections per infectious individual to less than unity.

Additional studies in populations with low background vaccination rates may help quantify the minimum vaccination coverage required to attain measureable indirect benefits.[24] The identification of a proper comparison population had implications for our assessment of effectiveness.

The objective was to develop a novel algorithm that can predict, based on field survey data, the minimum vaccination coverage required to reduce the mean number of infections per infectious individual to less than one (the Outbreak Response Immunization Threshold or ORIT) from up to six days in the advance.

Such information is invaluable because it allows us to determine the minimum sequencing coverage required before even beginning an experiment.