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Stringent criteria were used in this stage of analysis with a minimum core similarity of 1 and matrix similarity of 0.9 selected.
The top scoring model was defined as V$HOXF (strand orientation, distance to next element 43-51 bp), V$NKXH (strand orientation, distance to next element 7-14 bp), V$PARF (strand orientation, distance to next element 17-23 bp); V$BRNF (strand orientation, distance to next element 0 bp) at settings of minimum core similarity = 0.75 and minimum matrix similarity "optimized".
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Instead the EU would set minimum core principles for fracking on environmental safety and health.
The Committee on Economic, Social and Cultural Rights also interprets the principle as imposing minimum core obligations to provide, at the least, minimum essential levels of each of the rights.
We used a threshold of 0.75 for core similarity and the optimized setting for matrix similarity.
The cutoff matrix similarity was set to 0.8 and core similarity to 0.85 in the search.
Binding site positions and scores for matrix similarity and core similarity are indicated in Table 4.
The Matrix Family Library Version 7.0 (October 2007) was used and the selected groups were ALL vertebrates.lib where the standard (0.75) core similarity and the optimized matrix similarity was used.
8.3 integrated tool MATCH® by using the matrices V$EBOX_Q6_01 (cut-off core similarity: 1.00, matrix similarity: 0.99), V$MYC_Q2 (cut-off core similarity: 1.00, matrix similarity: 0.99), and V$MYCMAX_B (cut-off core similarity: 0.75, matrix similarity: 0.96).
We used as core similarity cut-off 0.99 and as total similarity cut-off 0.85.
The parameters used were the standard core similarity and optimized matrix similarity.
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