Sentence examples for minimum contig size from inspiring English sources

The minimum contig size for all assemblies was 200 nucleotides.

We chose 60bp as minimum contig size because conopeptides can be as short as 20 amino acids.

A single reference transcriptome was generated using Trinity package (release: 2013-02-25 with default parameters, kmers-25 and the minimum contig size fixed to 200 bp).

First, low-quality sections of RNA-Seq reads and remaining adaptor sequence were discarded, and the minimum contig size of the Trinity assembly was set to 200 bp.

This system was with a hash length of 31 bp and a minimum contig size of 200 bp, with other parameters set to default values.

Assembly proceeded using the following parameters: word size of 24, bubble size of 50, and minimum contig size of 150 bases.

The minimum output contig size set to 200 bp with the scaffolding option switched off; all other program settings were left unchanged.

The best assembly (i.e minimum number of contigs with maximum contig size) was obtained with a hash value of 23, resulting in 2,885 contigs with an N50 size of 11,807 bp.

The maximum contig size was 71,434 bp.

Minimum output/retained contig sizes were increased through the assembly using the flags "-lenf 60 1 -lenf 70 5 -lenf 80 20".

The following settings were used: automatic bubble size (50), minimum contig length of 201, automatic word size (23), perform scaffolding, and auto-detect paired distances.