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We used only vertebrate motifs that are most conserved from the top 10% of the most conserved regions (minimum conservation 70%).
The top 10% of conserved regions (minimum conservation of 70%) within 5000 bp upstream and matrix match threshold 95% was scanned for TFBSs in the JASPAR database (127) using a position weight matrices algorithm.
For each transcript, the top 10% of conserved regions in the 5000 bp up or down-stream sequences with minimum conservation of 70% and matrix match threshold of 80% were scanned for TFBS and the significance level was determined by Fisher's exact test score at p<0.05.
For each site, we evaluated the model for estimating discards from bottom trawl fishery associated with European minimum conservation reference size regulations, as well as discards caused by the low economic value of catches.
Only vertebrate transcription factors, with a specificity of minimum 10 bits and a TF score threshold of 90%, in parts of the sequences presenting a minimum conservation of 90% between the species.
Conserved D. pseudoobscura sequences were obtained from the Berkeley Genome Pipeline using the following parameters: minimum conservation width = 1; calculation window = 20; minimum conservation = 80%.
Similar(35)
The practices developed, with whatever equipment used, can be broadly classified into no tillage, minimum tillage, conservation tillage and conventional tillage.
For initial genome sequence pairwise alignment, a default setting value of 70% was used as the minimum percent conservation identity that must be maintained over the window size 11 for a region (> 50 bp) to be considered conserved.
Penal and rehabilitation institutions include maximum- and medium-security state prisons and correctional centres as well as minimum-security "conservation camps," at which inmates do primarily conservation work, such as firefighting.
Of those, 1,500 were inmates from minimum-security conservation camps run by the California Department of Corrections and Rehabilitation (CDCR), where they are trained to work on fire suppression and other emergencies like floods and earthquakes.
This model was able to consistently produce a road that met a minimum required species conservation benefit.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com