The objective function is obtaining the minimum consensus budget under a certain confidence level.
Each MicroChain has its own consensus module.
Similar T-cell immune responses induced by group M consensus env immunogens with wild-type or minimum consensus variable regions.
SNPs were filtered using maq.pl SNPfilter with minimum read depth (-d) of 20, minimum consensus quality (-q) of 20, and minimum adjacent consensus quality (-n) of 20.
By definition, the consensus module detection is designed to find modules that are shared between data sets.
The consensus module was defined as the smallest module (in terms of nodes) among the overlapping modules derived by the combinations.
This is congruent with our finding of their lack of conservation using the consensus module method.
Thus, the consensus module may need to be tuned for pyrosequencing reads.
bAdditional file 1 shows each consensus module as a list of Pfam/CAZy terms (Tables S1A-5A).
We studied the performance of consensus module detection under varying levels of added noise.
