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For domain pair dij in kingdom k, we first determined minCSijk – the minimum confidence score observed between CS di) and CS dj) in kingdom k.
The minimum confidence score for the taxonomy assignment to sequences was 0.8.
The ACC and F1 of all predictors increase with an increasing minimum confidence score.
The resulting inter-sentential language patterns are those with a minimum confidence score.
For example, YLoc-LowRes achieves an F1 of 0.84 and an ACC of 0.91 for a minimum confidence score 0.8.
We used a minimum confidence score threshold of 30 as a filtering parameter for the GATK UnifiedGenotyper tool (McKenna et al. 2010).
Similar(52)
The performance of YLoc on the animal BaCelLo IDS for different minimum confidence scores is given in Table 2.
Additional interactions for each disease module were determined using STRING, with a minimum score of 0.7 ('high confidence' score).
To ensure minimum false positives, interactions with confidence score greater than 700 were included in the network.
STRING's overall score with a minimum confidence of 0.7 is used as the measure of association.
STITC Hs overall score with a minimum confidence of 0.7 is used as the measure of association.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com