Sentence examples for minimum cluster length from inspiring English sources

The minimum cluster length was limited to 40 codons representing the approximate minimum size of a protein domain [57], since this avoids small clusters of a few closely spaced variants becoming highly ranked (see datasheet S3).

This requires a minimum cluster length of 120 (default = 65) and a minimum length of a maximal exact match of 40 (default = 20).

In order to detect the host of SUP05 viruses in the same data sets, a mapping of all sequences from each metagenome to non-viral SAG contigs was computed with mummer (Delcher et al., 2003) (minimum cluster length of 100, maximum gap between two matches in a cluster of 500).

To allocate assembled scaffolds to chromosomes, the existing X. maculatus genome with 24 cytogenetically identified chromosomes [ 10] was used as the reference to order and orient scaffolds for X. couchianus and X. hellerii using Nucmer3.0 [ 24], with the parameters of minimum cluster match length of 400 bp and max gap size of 500 bp.

The minimum PPO cluster length is based on 156,267 bp of sequence from BAC clone 212 G7 plus sequence from PPO2, PPO1/2 and PPO4 genes and their flanking regions and a calculation of sequence overlap between BAC clones 205 F12 and 32 D7 with 212 G7.

The input genomes are searched using Nucmer in an all-against-all manner using a minimum match length of 15 nucleotides and a cluster length of 60 (-l 15, -c 60).

Minimum cluster size = 25 voxels.

QT clustering algorithm groups genes into high quality clusters based on two parameters: "minimum cluster size" and "minimum correlation".

The minimum cluster size was set to 10 and minimum correlation to 0.75 (Pearson correlation).

The minimum cluster size was set to 30 and minimum correlation to 0.80.

Moreover, a minimum cluster size of 200 mm was chosen.