Sentence examples for minimum allelic frequency from inspiring English sources

Minimum allelic frequency is another factor that affects estimation of the extent of LD.

Three different minimum allelic frequency thresholds (0.05, 0.1 and 0.2) were used to study the effects of MAF on the extent of LD.

SNPs with a minimum read coverage of 10, present in at least two different reads (as recommended by Ingman and Gyllensten 2009) and showing a minimum allelic frequency of 1%, were called with the samtool mpileup program (Li et al. 2009) and kept for further analyses.

As indicated in the Introduction section, the first models of engineered underdominance (Davis et al. 2001; Magori and Gould 2006) predicted efficacy of a release strategy simply based on the minimum allelic frequencies of transgenes that resulted in future increases in frequency of those transgenes in a panmictic population.

Additional file 3: Table S1 presents the overall and chromosome-wise allelic frequency, number of alleles, allelic diversity, PIC and number of subpopulation-specific alleles.

Finally, SNP and InDel calling was performed using VarScan2 software (version 2.2.8; [ 49]) with a minimum depth of coverage of 4 per individual, a minimum quality of 30 per position and an allelic frequency of 0.9 for homozygous SNP/InDel and between 0.4 and 0.6 for heterozygous SNPs.

By comparison, an average of 41.5% of SNPs demonstrated an allelic frequency difference ≥20% when considering pairs of breeds (minimum value of 39% when comparing BMD with FCR and a maximum of 43% for BMD and GR) (Table S3).

The five alleles accounted for 54.81% of the total HLA-A allelic frequency.

A thousand markers were simulated for 250 subjects, with a minor allelic frequency (MAF), simulated for each SNP, based on a uniform distribution with minimum and maximum limits, respectively, 0.10 and 0.40.

Gene diversity varied from 0.263 to 0.856 and the major allelic frequency varied from 0.227 to 0.987.

No statistical difference in genotypic and allelic frequency of ACTN3 Arg(R 577Ter(X) was noted within the groups.