Sentence examples for minimum allele frequencies from inspiring English sources

Allele frequencies and the following statistical parameters of forensic importance were calculated using the Excel spreadsheet Powerstats (Tereba 2001): allele frequencies, minimum allele frequencies (MAF), probability of exclusion (PE), power of discrimination (PD), polymorphism information content (PIC), observed heterozygosity (Het), and typical paternity index (TPI).

Minimum allele frequencies at the loci were constrained to either 'low' (1 10%) or 'high' (20 30%).

These SNPs had at least 10% minimum allele frequencies (MAFs) in a Han Chinese Beijing population.

When calculating iHH, we excluded SNVs with minimum allele frequencies <0.05.

> > Population structure was analysed with GenAlEx 6.5 (Peakall and Smouse 2012), to obtain mean values per population of the total number of alleles, the number of alleles with a minimum allele frequency of 5%%, the number of effective alleles, the Shannon's Information Index, the number of private alleles, the expected heterozygosity, Rst and the estimation of gene flow.

Comparison between the genetic profiles allowed the identification of low frequency alleles and those with a minimum allele frequency (MAF) below 5%% were removed, then originating a panel of 1713 SNPs evenly distributed along the genome at a mean distance of 215,223 pb.

Since we were dealing with a haploid genome, and since heterozygous sites were unexpected, we used a minimum allele frequency threshold of 80% to call the alleles.

In the case where the minimum allele frequency is low, the difference between the frequencies of the two alleles at one locus is large and disparate, while the differences are much smaller when the minimum allele frequency is high.

All SNPs had a minimum allele frequency >5%, displayed less than 5% of missing values, and were in HWE (p > 0.05).

Minimum allele frequency (MAF) for the 1713 SNPs panel in japonica and indica groups of our collection and for those from 3KRGP were calculated using Tassel (Tassel 5.2.26, Bradbury et al. 2007).

Increasing the effect size reduced the minimum allele frequency at which an association could be detected.