Sentence examples for minimum allele count from inspiring English sources

To test for allele specific expression heterozygous SNP were selected from both samples using uniquely mapped reads (SNP quality > 10, minimum depth of 4x, minimum allele count of 2).

The absence of sequence context on one side of these polymorphisms further hampers the alignment of additional reads to form deep sequence clusters meeting the minimum allele count constraint applied during SNP detection.

We used a minimum coverage of 20 reads, a maximum coverage of 8000, minimum phred quality of 20 and a minimum allele count of 4 for identifying the variants.

Based on coalescent simulations, a discovery panel of eight samples with a minimum allele count of three best-reflects the design parameters of the BOPA SNPs (Fang et al. 2013).

To estimate π and θ W, all genomic sites subjected to analysis were required to have a minimum minor allele count of 2 and coverage between 10 and 500 for each population, as well as a minimum minor allele count of 4 and coverage between 20 and 1,000 across all the 10 populations.

We filtered for biallelic SNPs that were polymorphic in the target population (CEU, GBR, etc) with a minimum minor allele count of 10.

A discovery panel of eight chromosomes with a minimum minor allele count of three reflected the design parameters of the barley OPAs (Close et al. 2009).

FST values for each pairwise comparison were estimated for genomic sites with a minimum minor allele count of 4 across all the 10 populations and coverage between 10 and 500 within each population.

To identify genes likely to be differentiated as a result of selection, a subset of SNPs were identified using PoPoolation2 with stringent criteria: a minimum minor allele count of 6, and coverage between 36 and 500 across all the 10 populations.

A variety of statistical and common GWAS analyses were performed on the data sets (mean, square root, minimum, standard deviation, variance, allele count with a phenotypic filter) (Table 5).

Using a custom Perl script and the full data set, we identified 2000 SNPs (minor allele count = 4; minimum coverage = 8; minimum base quality = 20) on chromsome 3R, which are separated by at least 10,500 bp.